¶Interactive Molecular Simulations of Augmented Elastic Network Models
BioSpring includes a few examples to demonstrate different multi-scale representations and applications. Each example, when accessed through MolPlay, comes with a brief description, detailed documentation, and a video walkthrough. Look for screenshots in our image gallery.
¶List of Examples
- GK BS: interactive enzyme manipulation (coarse-grained)
- Investigates protein dynamics for an enzyme binding cleft
- Analysis of conformational changes
- Investigation of allosteric effects
- Mechanical properties study
- Compares with experimental data and more accurate simulations
- Detailed example walkthrough
- Investigates protein dynamics for an enzyme binding cleft
- OMPT: interactive membrane protein insertion
- Simulates protein insertion into implicit membrane
- Implicit membrane representation
- Support for various membrane geometries
- Explores preferred orientations and insertion depths
- Orientation and depth control
- Real-time parameter monitoring
- Detailed example walkthrough
- Simulates protein insertion into implicit membrane
- Protein-DNA: interactive DNA docking to a protein
- Demonstrates protein-DNA interactions
- Interactive positioning
- Physics-based assembly
- Explores electrostatic-driven docking
- Guiding field support
- Automatic refinement
- Detailed example walkthrough
- Demonstrates protein-DNA interactions
¶Additional Information
- Access full documentation for each example
- More examples will be added as they become available